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Author Topic: COVID-19 | science, damage limitation, NO POLITICS  (Read 86815 times)

Bart_van_der_Wolf

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Re: COVID-19 | science, damage limitation, NO POLITICS
« Reply #1240 on: June 02, 2020, 11:09:11 am »

More and more studies are pointing to useful observations, namely the role of relative humidity in the spreading of SARS-CoV-2.

Here is a recent study:
The role of climate during the COVID‐19 epidemic in New South Wales, Australia
https://onlinelibrary.wiley.com/doi/full/10.1111/tbed.13631
Quote
Abstract
Previous research has identified a relationship between climate and occurrence of SARS‐CoV and MERS‐CoV cases, information that can be used to reduce the risk of infection. Using COVID‐19 notification and postcode data from New South Wales, Australia during the exponential phase of the epidemic in 2020, we used time series analysis to investigate the relationship between 749 cases of locally acquired COVID‐19 and daily rainfall, 9 a.m. and 3 p.m. temperature, and 9 a.m. and 3 p.m. relative humidity. Lower 9 a.m. relative humidity (but not rainfall or temperature) was associated with increased case occurrence; a reduction in relative humidity of 1% was predicted to be associated with an increase of COVID‐19 cases by 6.11%. During periods of low relative humidity, the public health system should anticipate an increased number of COVID‐19 cases.
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degrub

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Re: COVID-19 | science, damage limitation, NO POLITICS
« Reply #1241 on: June 02, 2020, 11:35:25 am »

looks like the understanding of the genetic origin of this virus is getting closer
https://arstechnica.com/science/2020/06/sars-cov-2-looks-like-a-hybrid-of-viruses-from-two-different-species/

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John Camp

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Re: COVID-19 | science, damage limitation, NO POLITICS
« Reply #1242 on: June 03, 2020, 01:04:31 pm »

The seven-day running average of deaths in the US has turned up again. (Chart on the front page of the NYT.)
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Jeremy Roussak

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Re: COVID-19 | science, damage limitation, NO POLITICS
« Reply #1243 on: June 03, 2020, 01:54:28 pm »

BTW, there is specific terminology that one should strive for to use here. 'Isolation' is only used for people who have been confirmed to test positive. Others can/are placed in 'Quarantine', which helps with distancing from those who are contagious but do not yet have symptoms (Pre-symptomatic). If one develops symptoms, then they should get tested.

That's not the way in which the words are used in the UK, Bart.

And, for what it's worth, the virus is infectious but it is not contagious (spread by touch).

Jeremy
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Bart_van_der_Wolf

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Re: COVID-19 | science, damage limitation, NO POLITICS
« Reply #1244 on: June 03, 2020, 03:47:24 pm »

That's not the way in which the words are used in the UK, Bart.

Interesting, but surprising, Jeremy. Dutch scientists and those in the medical field in the Netherlands are very strict in their communications amongst themselves and with the general public. Since they are also, by necessity, very much internationally oriented, it is strange that there is not a uniform international use of terminology, jargon.

Quote
And, for what it's worth, the virus is infectious but it is not contagious (spread by touch).

Makes sense. Thanks.
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Bart_van_der_Wolf

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Re: COVID-19 | science, damage limitation, NO POLITICS
« Reply #1245 on: June 03, 2020, 03:58:39 pm »

The latest statistics from the Dutch 'bloodbanks', show that of a representative sample of blood donors who gave blood in the middle of May 2020 approx. 5.5% of them have antibodies for the virus. While that's up from 3.5% in April a bit more than a month ago, it is in no way enough to reach herd immunity any time soon.
« Last Edit: June 04, 2020, 11:50:50 am by Bart_van_der_Wolf »
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Alan Klein

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Re: COVID-19 | science, damage limitation, NO POLITICS
« Reply #1246 on: June 03, 2020, 05:35:04 pm »

That's not the way in which the words are used in the UK, Bart.

And, for what it's worth, the virus is infectious but it is not contagious (spread by touch).

Jeremy
The US CDC still recommends cleaning regarding touching items.  Here's an example.  You can see the rest of "touching" issues on the link. I disinfect all items before bringing them into the house or l leave for three days in the garage before bringing them inside.

"Wash your hands or use hand sanitizer after accepting deliveries or collecting mail

After receiving your delivery or bringing home your takeout food, wash your hands with soap and water for 20 seconds. If soap and water are not available, use a hand sanitizer with at least 60% alcohol.
After collecting mail from a post office or home mailbox, wash your hands with soap and water for at least 20 seconds or use a hand sanitizer with at least 60% alcohol.
"
https://www.cdc.gov/coronavirus/2019-ncov/daily-life-coping/essential-goods-services.html?utm_campaign=20200603_cvd_prv_gal&utm_content=english&utm_medium=email&utm_source=govdelivery

BobShaw

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Re: COVID-19 | science, damage limitation, NO POLITICS
« Reply #1247 on: June 03, 2020, 07:09:39 pm »

And, for what it's worth, the virus is infectious but it is not contagious (spread by touch).

That is certainly different to what we are told in Australia

The virus can spread from person to person through:
close contact with an infectious person (including in the 48 hours before they had symptoms)
contact with droplets from an infected person’s cough or sneeze
touching objects or surfaces (like doorknobs or tables) that have droplets from an infected person, and then touching your mouth or face
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hogloff

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Re: COVID-19 | science, damage limitation, NO POLITICS
« Reply #1248 on: June 03, 2020, 08:36:50 pm »

That is certainly different to what we are told in Australia

The virus can spread from person to person through:
close contact with an infectious person (including in the 48 hours before they had symptoms)
contact with droplets from an infected person’s cough or sneeze
touching objects or surfaces (like doorknobs or tables) that have droplets from an infected person, and then touching your mouth or face

Here's details from the Canadian Covid 19 sight.

Human coronaviruses cause infections of the nose, throat and lungs. They are most commonly spread from an infected person through:

respiratory droplets generated when you cough or sneeze
close, prolonged personal contact, such as touching or shaking hands
touching something with the virus on it, then touching your mouth, nose or eyes before washing your hands
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Paulo Bizarro

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Re: COVID-19 | science, damage limitation, NO POLITICS
« Reply #1249 on: June 04, 2020, 07:47:39 am »

That's not the way in which the words are used in the UK, Bart.

And, for what it's worth, the virus is infectious but it is not contagious (spread by touch).

Jeremy

If you sneeze into your handand shake hands with another person, you can infect them. So yes, it spreads by touch.

Alan Goldhammer

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Re: COVID-19 | science, damage limitation, NO POLITICS
« Reply #1250 on: June 04, 2020, 01:19:34 pm »



And, for what it's worth, the virus is infectious but it is not contagious (spread by touch).


I have read nothing over the past 12 weeks that points to that being true.  I would be happy to be corrected if you can site a scientific paper on this.  Contact spreading is not as big a risk as inhalation but it is not zero.
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kers

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Re: COVID-19 | science, damage limitation, NO POLITICS
« Reply #1251 on: June 04, 2020, 05:05:56 pm »

Correct -I read many times it also spreads by touch (- so that is why they want you to wash your hands often -)
 and then your contaminated hand has to reach for your eye /mouth for the virus to get to get inside your body.
so if contagious disease means:  it can be caught by touching someone who has the disease... then yes it is contagiaous, although it does not directly cross your skin.
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BernardLanguillier

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Re: COVID-19 | science, damage limitation, NO POLITICS
« Reply #1252 on: June 04, 2020, 08:03:47 pm »

The Lancet and New England Journal of Médecine have both withdrawn their very high visibility articles discrediting the Chloriquine.

It appears that all the suspicion of strongly biased results based on at least mistaken, and possibly fake, data was totally founded.

It raises very deep questions about the credibility of information published by these journals and about these journals as credible information providers. This stain cannot be washed.

In other news, there is a growing number of publications about the possible benefits of pre-existing lymphocytes T based immunity resulting from earlier exposure to less dangerous forms of corona virus.

This is aligned with the Japanese article I shared last week.

It would explain why kids are mostly unaffected.

Regards,
Bernard
« Last Edit: June 04, 2020, 09:40:37 pm by BernardLanguillier »
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John Camp

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Re: COVID-19 | science, damage limitation, NO POLITICS
« Reply #1253 on: June 04, 2020, 11:50:11 pm »

The Lancet and New England Journal of Médecine have both withdrawn their very high visibility articles discrediting the Chloriquine.

It appears that all the suspicion of strongly biased results based on at least mistaken, and possibly fake, data was totally founded.

It raises very deep questions about the credibility of information published by these journals and about these journals as credible information providers. This stain cannot be washed.

In other news, there is a growing number of publications about the possible benefits of pre-existing lymphocytes T based immunity resulting from earlier exposure to less dangerous forms of corona virus.

This is aligned with the Japanese article I shared last week.

It would explain why kids are mostly unaffected.

Regards,
Bernard


I would have to disagree about the stain. What they did was a demonstration of good medical ethics. The two analyses that were withdrawn were based on data sets that appeared to be valid (and the statistical methods *were* valid) but the data, it seems, cannot be validated. The articles never said that chloroquine was effective against covid-19. One of the articles said that the drug greatly increased heart problems, but the compilers of the data set have refused so far to release the dataset for outside auditing, so three of the four authors asked that it be withdrawn. The other paper looked at the effect of two other drugs on covid-19 patients, and as was the case with the first paper, the data sets could not be confirmed. There's a larger article about this oknt he front page of the Ars Technica website. https://arstechnica.com/science/2020/06/lancet-hydroxychloroquine-study-retracted-shady-data-still-shady/
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Alan Klein

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Re: COVID-19 | science, damage limitation, NO POLITICS
« Reply #1254 on: June 04, 2020, 11:55:26 pm »


I would have to disagree about the stain. What they did was a demonstration of good medical ethics. The two analyses that were withdrawn were based on data sets that appeared to be valid (and the statistical methods *were* valid) but the data, it seems, cannot be validated. The articles never said that chloroquine was effective against covid-19. One of the articles said that the drug greatly increased heart problems, but the compilers of the data set have refused so far to release the dataset for outside auditing, so three of the four authors asked that it be withdrawn. The other paper looked at the effect of two other drugs on covid-19 patients, and as was the case with the first paper, the data sets could not be confirmed. There's a larger article about this oknt he front page of the Ars Technica website. https://arstechnica.com/science/2020/06/lancet-hydroxychloroquine-study-retracted-shady-data-still-shady/
It hurt political leaders and mislead the public.  How many other studies are tainted causing confusion in the public and mislead public policy adding to economic and other damage?

BernardLanguillier

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Re: COVID-19 | science, damage limitation, NO POLITICS
« Reply #1255 on: June 05, 2020, 01:58:31 am »


I would have to disagree about the stain. What they did was a demonstration of good medical ethics. The two analyses that were withdrawn were based on data sets that appeared to be valid (and the statistical methods *were* valid) but the data, it seems, cannot be validated. The articles never said that chloroquine was effective against covid-19. One of the articles said that the drug greatly increased heart problems, but the compilers of the data set have refused so far to release the dataset for outside auditing, so three of the four authors asked that it be withdrawn. The other paper looked at the effect of two other drugs on covid-19 patients, and as was the case with the first paper, the data sets could not be confirmed. There's a larger article about this oknt he front page of the Ars Technica website. https://arstechnica.com/science/2020/06/lancet-hydroxychloroquine-study-retracted-shady-data-still-shady/

Hi John,

I am sorry if I am misunderstanding your comments, but I'll have to strongly disagree with you on this. I highlight some fragments in bold since my answer is a bit long.

This study should be considered as devoid of any value for the following reasons:
- It's an a posteriori study without any clarity about the data (no information about the doses administrated, no information about the protocols,...), this is a huge problem because it doesn't allow peers to confirm how the drug was administrated
- It's full of errors (some hospitals were wrongly categorized, the patient health profiles are identical across continents,...)
- The groups of patients to whom the Chloroquine was administrated (6,000 patients) differs significantly from the group of patients to whom it was not administrated (90,000 patients). They display significantly different  conditions (among other respiratory condition) when the Chloriquine was given, which means that it's impossible to compare the results since the baseline was different
- Many of these patients appear to be patients that were suffering from heart disease in the first place, patients to whom one typically would not recommend chloroquine, meaning that there is a huge sample selection bias
- the timing of chloroquine administration appears to have been done too late (patient with already severe respiratory symptoms) compared to the timing when it is valuable (earlier in the life cycle of the infection)
- And, last but not least, it was not reviewed by any peer before publication, which by itself is enough to discredit it completely as a scientific publication

With data so poor, the conclusions have absolutely no value. So no, the publication of such crap is absolutely not ethical. It simply says nothing for or against the value or efficiency of the Chloriquine nor anything about its dangers. You can give aspirine to 1,000 people about to die and conclude that aspirine is a terrible killer. That's the same level we are talking about with the Lancet article.

Anyway you look at it it's a shame for science and for the Lancet and I maintain that it's a terrible hit for their credibility. Their editor should be fired on the spot for having authorized the publication of this article. The sensitivity of the topic was perfectly understood, the weakness of the article and it's creaming methodological holes cannot not have been 100% clear for the Lancet, the political impact was clear too. This isn't science, it's politics.

The withdrawal of the article is an obvious confirmation of the issue. It appears that on average only 4 out 10,000 scientific articles are withdrawn every year in leading publications. It's a very rare thing and incredibly rare for high visibility articles making the headlines outside the scientific community.

Note that I don't make any mention of the links between the authors and the pharma industry, but they are closely related to Gilead. The one company with a vested interest in killing the Chloriquine since it is competing with their 4 BUS$ ineffective drug, the Remdesvir.

Cheers,
Bernard
« Last Edit: June 05, 2020, 05:23:41 am by BernardLanguillier »
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Bart_van_der_Wolf

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Re: COVID-19 | science, damage limitation, NO POLITICS
« Reply #1256 on: June 05, 2020, 03:41:19 am »

How many other studies are tainted causing confusion in the public and mislead public policy adding to economic and other damage?

Until they are withdrawn, after peer review, none.

But let's not get into unscientific conspiracy theories again, there are other threads for that.

Also, a good indicator of usefulness is the number of times, a paper is referenced in another study, and the authors who do so. But that takes time to evolve.
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Robert Roaldi

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Re: COVID-19 | science, damage limitation, NO POLITICS
« Reply #1257 on: June 05, 2020, 07:53:48 am »

Until they are withdrawn, after peer review, none.

But let's not get into unscientific conspiracy theories again, there are other threads for that.

Also, a good indicator of usefulness is the number of times, a paper is referenced in another study, and the authors who do so. But that takes time to evolve.

I agree wholeheartedly. I used to work in scientific publishing and the idea that these publications have a political agenda is too silly for words. Unfortunately, bad procedures sometimes get past reviewers and articles have to be later retracted. In this case, the authors retracted the article THEMSELVES after finding out about problems in data collection on which they relied.

This demonstrates a different problem than the imagined one with scientific literature, imo. During this pandemic, we have heard from time to time people advocating for speedier adoption of vaccines/treatments, elimination of bureaucracy, as if management efficiency techniques can be widely applied to the development of drugs, that we should just relax some "unnecessary" safeguards. (My own personal opinion of those statements is not polite.) But, given that we are willing to make that compromise, when you do so you are accepting that some things will slip through the cracks, that mistakes will be made more frequently than otherwise. You can have fast and you can have good but it's almost impossible to have both. If you do expect both, what you are actually saying is that you believe in luck. Sometimes that might work, but it is foolish to rely on it.
« Last Edit: June 05, 2020, 08:00:46 am by Robert Roaldi »
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Alan Klein

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Re: COVID-19 | science, damage limitation, NO POLITICS
« Reply #1258 on: June 05, 2020, 08:03:42 am »

Until they are withdrawn, after peer review, none.

But let's not get into unscientific conspiracy theories again, there are other threads for that.

Also, a good indicator of usefulness is the number of times, a paper is referenced in another study, and the authors who do so. But that takes time to evolve.

This whole thread is deficient because you can't discuss politics.  How can you review a scientific study that has political influence without discussing politics?  When a study has both medical and political influence in a community, to discuss only one aspect of it is stupid.  It creates wrong conclusions and allows bogus ideas to have influence without posters being able to comment in an intelligible way.  That's why I started my thread.  Only when you can hear all thoughts about ideas can there be intelligent discussion.  By limiting discussion to medical only, you’re shooting yourself in the foot and cutting your nose off to spite your face.

Chris Kern

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Re: COVID-19 | science, damage limitation, NO POLITICS
« Reply #1259 on: June 05, 2020, 09:01:56 am »

. . . you’re shooting yourself in the foot and cutting your nose off to spite your face.

Once again, if you want to beat a dead horse and preach to the choir, please pack up your metaphors in your old kit bag and take a hike over to the "playpen" thread.
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