What has that to do with anything that is not stationary? I don't see the relevance to manual vs auto-focusing in any case.
Since you didn't realize that, even in automated stack shots, the parameters are first set
manually, and what is automated is the camera platform,
not the lens, the relevance is this:
1) The absolute, most critical focusing is always done
manually on tiny, still subjects (
not via AF).
2) The absolute, most critical focusing of moving subjects is always done
on a tripod, with manual focus also atop a gimbal or other movable head.
AF has been brought up to a good, appreciable level that works on many
larger subjects (landscapes, large animals, humans, etc.), but this can hardly be considered "critical focus" ...
In fact, razor-sharp imagery is often avoided for portraiture, so by all means keep using AF there if you like.
But, where absolute detail is everything, MF is the way to go.