I've been wondering the same, although my exposures do not approach times as long. I use a 1DMkii for night-time HDR, usually with 5 exposures at least 1 EV apart. I have been driven crazy by the extra time for dark-frame noise reduction in the camera, as a typical sequence might start with a 1-minute exposure, followed by 2, 4, 8 and 16 minutes, each doubled by the NR.
I have not had a chance to experiment, but the idea of preparing a "stock" of lens-capped exposures to use later sounds doable if not ideal. I wonder if anybody here has tried the 1Dii on long exposures without the NR?