Thanks folks for all the suggestions. Lots of ideas for me to mull over the rest of the weekend.
Answers to some questions or comments above:
Firstly are you using or processing to 8 bit? That will do it in my experience when the program tries to normalize the levels between the shots.
If you provide me the files that you sent to the stitching program (tiffs I assume) then I'll run it through Autopano (I have a lot of experience with it) and send you the finished product. See if it fixes the problem.
- Everything is done 16 bit, until the last step which is to convert to a jpeg for printing at 8 bit.
This is the result of using a lens at an aperture where light fall off is too important. I would stop down to at least f8 with even the best lens for this type of pano.
- I had planned in the future to shoot panos and landscapes at around f8, mainly for improved depth of field. In past I have been shooting more wide open to let me use faster shutter speeds and/or lower ISO. Did not know about this.
Make sure your PTGui is the latest version. There is an exposure correction function for adjacent frames under the "HDR" tab (if memory serves) that may help with your problem.
- When I did this I was at 8.14 - I see an 8.15 version is now available.
In addition to 16 bit, if you are processing the originals in raw format bring the contrast and saturation as close as possible to what you want before going on to stitching or other post processing. Usually you will suffer the least quality loss from radical contrast increases at the raw conversion step. And to be perfectly honest, sometimes it is best to substitute a Photoshop gradation for smooth skies that are that noisy.
- I made adjustments in ACR before stitching. Where I may have gone wrong, if I understand your point correctly, is in using ACR on the resulting TIFF panorama file to make some additional adjustments, primarily in HSL, curves, and some tweaks to the sharpening.
Should also mention that old versions of Smartblend and other blenders can generate artifacts like that. If you are using CS4 and PTGui, you can output your PTGui files as individual layers, then let CS4 blend them for you. CS4 blending is arguably the best blender today, though others may disagree. I have found it can do wonders on problem skies. I have also heard that the current version of Smartblend and the PTGui blender in the latest release are excellent.
You should also consider noise reducing the original panels before stitching, noise makes blending more difficult, although CS4 blends noisy skies pretty well.
- I am running CS3 so I do not know if your blending suggestion with CS4 applies to my situation (I usually upgrade paid software such as Photoshop on an alternating version cycle meaning I am awaiting the arrival CS5)
So thanks again for all the suggestions. It appears that I will either start this over again from scratch, or try Bill T's suggestions if time becomes a real constraining factor (his sounds like the quicker route at the moment). I have to spend the rest of the long weekend (in Canada) painting the room in which I have my PC from a deep Hunter Green (yuck) to a neutral white (so 4 coats of primer/paint) plus, my PC hard-drive is jammed and so I am installing a larger drive (easy) and have to also attempt to add hard-drive space to my operating system's drive partition (dangerous, subject to total disaster, back-ups to be done of course)