Man I feel bad for you guys going through a 58ml ink dump. I have a 6400, and I wonder if you would find this helpful, although I'm not even sure if its applicable.
Is there way to enter the service mode on the Pro-1000? I imagine that since its based on the 2000 and 4000, there should be a way. What I do on my 6400 when I haven't printed in a few days is enter the service mode, and do a nozzle check from the service menu that shows me all the nozzles. This way, I'm seeing the actual status of every nozzle, but I'm also having the printer print something. I have seen that this must now reset the clock for how long its been since a print has been made. Then, when I reboot in regular mode, it will no longer do a clean cycle.
I noticed that on the 6400, after 3 days or non use, it would do a clean cycle which used 14ml of ink. What a waste this is because this prints roughly 14 square feet which is quite a bit when you consider an 8x10 isn't even one square foot. But if I do the nozzle check in the service mode, it no longer will do a clean cycle. Even if I saw a few clogged nozzles, I would still just do regular prints because I feel that one or two clogged nozzles will not affect the print, and after its been printing a bit, those nozzles might in fact come back to life. You can certainly test this if you then do a nozzle 1 pattern from the service menu again.
Now this is a lot of trouble to go through, so I usually just make sure to print every 2 days, even if its just a pattern I have which prints roughly every color channel on a plain piece of copy paper. It uses 0.3ml of ink, which is nothing in the whole grand scheme of things, but keeps the ink flowing.
I have left my printer off for 7 days, come back, booted up in service mode, did a nozzle 1 check from the service mode, looked fine, turned off and back on in regular mode, and then did a normal print with no trouble, and more importantly, no clean cycle.