My advice: put the photo/file away for a month and then come back to it fresh.
Ditto.
Before going any further, consider carefully what your end game is. What will the photo be used for? Who will be looking at the photo. The answer should help determine some of your direction with the photograph.
For example, the "tower" to anyone not familiar with SF is an eyesore in an otherwise compelling photograph.
The colours, to anyone not concerned about reality (photographers tend to be more concerned than the average Joe/Jill), maybe just fine. To many, their surrealism is a detriment.
If it's for a stock agency then the more compelling the better.
If it's for your wall only, well, anything goes.
Lots of "ifs" that only you can answer. There is no "right" way only ways that may be more or less acceptable to one group or another.
Do you want to play it safe? Follow the "rules". If you prefer to be more avante garde, then do whatever satisfies your original compulsion to make the photograph.
BTW, try raising the values of the fog so it looks less like a desert wind storm/mountains, unless, of course that's the way you envision it.