No, because the retrofocus design is needed to accommodate the reflex mirror for the optical viewfinder, and has nothing to do with film or digital or microlenses. There has to be enough room between the lens and film/sensor for the mirror to move without hitting anything.
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The need of standard micro-lensed sensors for a high exit pupil to get a high degree of near telecentricity sometimes goes beyond what comes simply from designing a lens with high enough back-focus distance to clear the reflex mirror, at least with very wide angle lenses.
For example, 35mm SLR's have lens mounts about 42mm to 47mm from the focal plane. Lenses with exit pupil about level with the lens mount send light to the corners of the 35mm format frame at an angle of 24-26º off-perpendicular; if the rear elements protrude into the body, the angle could be larger. At 25º, Kodak's microlensed CCD's (e.g. KAF-5100CE in E-1, KAF-8300CE in E-500) have sensitivity about 35-50% of maximum, about one stop lost. In fact Kodak's graphs for those CCD's stop at 25º, while for non microlensed CCD's they go to 40º. At 25º, Kodak CCD's without microlenses still have about 90% of maximum sensitivity: negligible "vignetting". The 8º microlens offset would reduce the effective angle to 17º, at which sensitivity is again 90% of maximum; back to negligible "vignetting".
Olympus in its descriptions of the FourThirds standard has mentioned a target of light reaching the corners no more than 7º off perpendicular, far stricter than what is automatic in SLR wide angle lens designs, and leading to the use of more highly retrofocus designs in their lenses that cover wide angles, increasing weight and complexity (lots of lens elements.) This microlens progress could eliminate that design constraint.
Aside: apart from off-setting the microlenses, other progress has improved the off-perpendicular sensitivity of the 31MP KAF-31600 to 80% at 25º and 60% at 30º, so perhaps this too indicates that the problem of "microlens vignetting" is going away.