The comparisons I've made that find a D3x close if not equal to 6x9 cm film on detail extraction , and noticeably superior on overall image quality, use a Nikon Super Coolscan 9000 to scan the film (all of my film vs. digital subjective numbers are based on the Super Coolscan 5000 and 9000, the scanners with which I have the most experience) . That's actually a very fair comparison, because any scanner better than the Super Coolscan would cause the 6x9 outfit to significantly exceed the cost of the D3x (without factoring in the cost of film and processing). A better scanner could not extract much more detail from the Velvia, because the Super Coolscan is already scanning film grain - it could, however, potentially extract more dynamic range, especially in the shadows, bringing the overall image quality closer.
I am confident in saying that the only film setup that can produce an image with overall quality superior to the D3x (and potentially the 20+ mp Canons and/or the Alpha 900, about none of which I claim knowledge) correctly handled (ISO 100, good lens, tripod) without significantly exceeding the cost of the D3x (therefore no drum scanners or $50,000 EverSmart flatbeds) would rely upon 4x5 or larger sheet film or possibly slow, exotic 120 black and white film (Tech Pan, etc...).
It is certainly possible to beat the detail extraction of ANY digital camera, including the 50+ MP medium format digital backs, by the simple expedient of using a large enough piece of film. Right now, it seems to me that the best digital sensors are roughly equivalent to a piece of film 4x their ares (FF35 digital ~6x9 cm film, 645 digital ~4x5 film), and that various technical limits (diffraction, quantum-related noise) will hold them not too far above that (I would have a hard time seeing pure detail extraction ever exceeding a piece of film 6x the area of the sensor), although perhaps with improved image quality in other areas such as dynamic range or tonal scale. If this is even roughly correct, it will take an image sensor somewhere on the scale of 4x5 inches to equal the quality possible from 8x10 film, and around 5x7 inches to equal 11x14 film. While the cost of silicon of a given capability goes down rapidly with time, the cost of a given AREA of silicon does not. A 4x5 inch single-shot image sensor will remain prohibitively expensive to anyone who is neither Jim Jannard (the eccentric billionaire founder of Oakley sunglasses and the RED movie camera company, who owns 1500 cameras) nor employed by the "Bureau of Public Roads" (the famed label on the CIA's highway exit) in Langley, VA. An 11x14 Canham field camera will remain forever capable of capturing an image that no digital sensor in general circulation can touch without a lot of stitching (of course, an 11x14 camera is so tricky to set up and use that I'm not AT ALL sure that a 20-shot stitch with a D3x isn't an easier way to that image quality).
-Dan