That doesn't mean anything. The brightness of a conversion is totally arbitrary, in an absolute sense.
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I wasn't looking only at the brightness of the image but how far the histogram was from the right with all other controls in ACR at zero. The 5D image requires a +0.33 EC adjustment to bring the histogram just short of touching the right vertical, producing a value in the brightest part of the image (the centre of the white GM patch) of 252, 250, 240.
The 1D3 image, which also looks darker in the ACR default position, requires a +0.67 EC adjustment to bring the histogram to the right, producing an almost identical value in the centre of the white GM patch of 252, 250, 242.
Since we already know from dpreview tests (and probably other tests that you are aware of) that the 5D ISOs are 1/3rd of a stop understated, the above comparison would tend to suggest that the 1D3 is now accurately stating ISO values, as is the 40D.
This result might not be conclusive. However, if ACR is the preferred RAW converter, it would seem that users of the 1D3 should generally be exposing scenes 1/3rd of a stop more (with the same lens at the same aperture and same ISO setting) than they would with a 5D, for a full ETTR.
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