I’ve never seen a shift in color after updating. I’ve been on the new version since the software told me to update (several months ago), and like Rodney recalibrate my 301w and 302w every 30 days. Never an issue. The calibration after the new software matched perfectly.
Whatever the reason, it’s not the software. Something unique to your system is causing the problem, so instead of trying to figure it out, just use the new software with the new values that gives you your match. If this was a bug, there are quite a few users that would have reported it months ago.
Or you can spend a bunch of time trying to figure it out, but no one can help since it’s unique to your setup.