Simple keystone correction is fairly easy in software but complex vertical and horizontal lines that would exist in a nodal pan stitch are a nightmare and best shot with movements...... at least that has been my experience.
Were you using PTgui Pro when you did those tests?
IMHO, this is the only stitching software I would trust for accurate planar projection of such images. Both autopano pro and PS generate default results that are very different from what a lens (shifted or not btw) does generate.
I am not saying that stitching is necessarily the best option, there are intrisic problems with stitching in some cases too - not to mention preferences in terms of shooting experience, subject constraints,... - , but I don't believe that the reproduction of vertical/horizontal lines is one of those problems when using PTgui Pro.
Cheers,
Bernard