I have found that to use "Darken" mode and the clone stamp successfully, you must be working on a full pixel layer, not on a new empty layer with use all layers selected.
I use a blank new layer set to Darken and the clone stamp also set to Darken and it works well. Advantages:
(1) smaller file size
(2) if you clone to heavily you can use a 5% eraser or so to erase gradually to lighten up the area.
(3) you can erase mistakes in a selected area without undoing all the work you have done up to that point.
(4) whole thing looks too dark, reduce opacity.
(5) whole thing looks too light, make a copy. Reduce opacity and erase selected areas till it look good.
Sometimes you have a bright halo at the horizon and have to use a high (10%) clone to reduce it. Even using a small brush you may get a dark line or area above the halo. Use the eraser to remove this keeping away from the halo. This is usually easier than trying to keep the clone only in the halo area. Similar to the technique in LR where when making a selection and even using Auto Mask and the selection keeps running over. Instead of trying to painstakingly stay inside the lines, go sloppy and then hold the Ctrl option to set the current brush to erase, and then go over the selection and ease the overrun. It works much better, Auto Mask much more efficient and you do not have to be as careful.
I do HDR panos at sunrise and always run into this problem. A particular problem is bare trees, the areas inside the tree limbs is often way too light and their usually a noticeable halo around the tree. There is nothing you can do in the processing or taking part. It must be fixed in post. There is a section of landscape with tree that I have photographed many times under different light and using HDR and there is a particular section around the tree which is always way brighter than the sky.
For the problem above where the sky is darker than the foreground and you can't clone using Darken from the sky into the foreground because it will darken the foreground. Clone from the foreground to the sky. Instead of filling in with the sky color, it will use the foreground color.
My pet peeve and PS bug. The icon for "Use the same offset for each stroke" clone option has a mind of its own. It will change modes unannounced without you doing anything. It is as if there is a gremlin in your keyboard that sees that you are using this option off and peevishly turns it on thus confusing you and messing up your work. It has been reported but it is a 'legacy' bug that has been around for so long that they will not fix it. It is like the blend mode bug in the layers panel. When you select a new blend mode, it remains active and you must escape or click you mouse somewhere on the screen before you can use another function. It has been around forever and many complaints have been logged but they will not change it.
Yes this is tedious and time consuming. But it is often the only thing you can do if you want a good image.