Sorry to hear you're having these problems. Here is a trick I use to diagnose and clean printheads:
Put just the bottom of the offending printhead in a small tray of warm water under the sink.
Continue soaking the bottom of the print head, ocassionally cleaning the bottom with a lint free cotton cloth.
After 15 or 30 minutes, dry off the print head and "stamp" a folded over paper towel.
Look carefully at the pattern. If the print head is working right, a consistent line of blue and green (if it is a BG head) will show up perfectly. If there is a clog, only part of the line will show. Compare the lines side by side, looking carefully. These line patterns will correspond exactly with a diagnostic image. Keep soaking and cleaning until the printhead shows a clean stamp pattern.
Here is the long and short of it IMHO: printheads are relatively cheap. Less than an ink cartridge. Spring for a new printhead and be done with one critical aspect of a methodical trouble shooting excercise.
Apparently you can't get to the EPS without removing the carriage so try blowing some canned air up under the carriage carefully to clear any debris blockage that may be causing a problem.
It is possible that the color sensor can't scan because the print is not clear because of a bad printhead, however. You can try just powering the printer off, replace the printhead, then power back on. Then run a diagnostic print before aligning the head to see if the head is still clogged. If the head is not clogged, then try another print head alignment cycle.
Above all, don't panic. Be methodical, and carefully research and continue troubleshooting until you solve the problem.
Frequently pilot error is at the root of things. Check and recheck until you get back on track.