You may be aware Michael has reviews of both Noise Ninja and PK Sharpener Pro on the website. I don't think there is any material about using them in sequence.
From my experience with them, this is a matter of experimenting with what works best on particular images. If this is of any assistance, after using Noise Ninja, and after PK Capture Sharpening, if I think the photo still needs a bit more sharpening I go into PK Sharpener Effects and use generally a fairly low level of either Luminance Sharpening, High Pass Sharpening or Edge Sharpening, depending on what looks best. Since they all work as layers and the program runs quite quickly, there is no risk and little time lost creating and trashing different types and strengths until you get what looks best, being careful not to oversharpen. Bruce Fraser has recommended viewing the sharpening effect on the monitor at 50% or 75% magnification.