Hi Jojo,
I used to work at PocketWizard's tech support department, right up with the engineers in Burlington Vermont. Now that I'm with Capture Integration, a few of my coworkers pointed me over to your post to see if I could help.
A lot of the issues users experience with their flashes and their radios above their camera's nominal sync speed is due to two factors:
1.) Radio Latency delay due to processing time.
2.) Flash duration.
Radio latency delay is simply the time it takes for the transmitting radio's signal to go through the receiving radio's antenna to exiting the radio's miniphone port. Typically, the radio latency of a PocketWizard Plus III, PlusX, or MultiMAX is about 500 microseconds, or 1/2000th of a second. Newer ControlTL units like the MiniTT1 and FlexTT5 tend to follow the same 500 microseconds limitation, although (with compatible cameras) they work around sync timing by doing some of the transmission before your camera's shutter even opens. DF bodies aren't compatible, however, so you'd need to use these radios in Basic Trigger mode, which limits you to the normal 500 microseconds processing time.
However, most models of the MultiMAX and all Plus III radios have a mode called FAST mode. This shortens the microprocessing time to 250 microseconds, or 1/4000th of a second. This gets the signal out must faster, and allows you to sync at higher shutter speeds when using leaf shutters.
When you start getting faster and faster speeds, you run up against the flash duration side of the equation. Remember, the amount of light in your scene is additive. When you have a longer flash duration, it takes longer for the entire flash output to be rendered to your scene. When you're using higher shutter speeds, you can run into the scenario where you get less overall flash intensity in frame because the flash hasn't full put out all of its juice. On focal plane shutters, this can be shadowing at the bottom of the frame, but with leaf shutters, this can be darker images than at the rated X-sync speed of the camera.
The good news for you is that it's not your flash gear itself that's the problem, it's the radios.
Unfortunately, with the radios you have (the Plus II, MiniTT1, and FlexTT5) there are no ways to get FAST mode enabled. You'd need to use a MultiMAX with FAST mode (one of the USB models would do nicely,) or a Plus III. You'd need, bare minimum, one of those radios, and then you could use a MiniTT1 or a FlexTT5 on your camera. You cannot use a Plus II as a transmitter in this scenario because it does not transmit on the Channels required for FAST mode.
For a tl;dr summary, the radio gear you have right now won't allow you to tap the maximum potential of your leaf shutters; you'd need a Plus III or MultiMAX in FAST mode on your lights, and a Plus III, MultiMAX, or one of your MiniTT1s or FlexTT5s (set to Standard Transmit Channel 17 or higher) on your camera body.
You can see Capture Integration's test results with this setup here:
https://captureintegration.com/definitive-guide-to-medium-format-high-speed-sync/Using that post's information (it was created and tested before my time here) you can get up to 1/1600th with a Mamiya DF body and a Credo back.
Hope that helps! If you have any questions, let me know!