I've been scanning various papers to build profiles for a new 3880. I am using an i1io with i1Pro and i1Profiler 1.5.0. I have run i1Diagnostics on the spectro and table and they pass. When I load the saved files into ColorThink Pro, I get weird results. Most patches are excellent, but some are wildly out. I have no idea what is causing this. Here's a link to a screenshot of CTP displaying a de. http://www.jeff-grant.com/photo21385664.html
Something went horribly wrong creating the file in the imddle column ("...VFA 1440 #3_M2.txt")
The L columns are the L* component to the LAB colorspace. It refers to brightness, ranging from 0 (pure black) to 100 (pure white.) The left and right columns in the screenshot are showing the columns on the screen as being fairly light (77% brightness and up.) But, the middle ("...VFA 1440 #3_M2.txt") column shows all those as very dark, almost near black (8% brightness and down.)
Hopefully the spectrophotometer wasn't seated right in that read. If the distance between it and the target was more than it is supposed to be, it would see less light reflect back and measure everything significantly darker.
Just throw out the middle column and pretend it never happened... Unless it happens often. Then, perhaps, if you know the spectrophotometer was seated right, it might be having intermittent light source problems. Any type of self-diagnostic will only see how an instrument is acting during the test, and intermittent issues wouldn't show up.