these numbers are ADC output levels after the different cameras have likely applied levels of amplification to the signal
Yes, but the level of amplification (gain) does not change the linear proportion between input count and linear output number. Say, well is 32,000 electrons, gain is 8, maximum output count is 4,000 (12 bits). We collected half well, 1 EV less than full, 16,000; so it is 2,000 output counts, once again 1 EV less than full. We can just consider the normalized count, dividing by 32,000 at input, or divided by 4,000 at output. Normalized counts at input and at output are identical (less noise introduced by the amplifier and ADC).
The ADC and amplifier are optimized so that "full well" closely corresponds to the maximum output. Photon count is proportional to electron count through quantum efficiency. To the effect, we have a very linear system; and where it is not linear (deep shadows and extreme highlights) we want to clip to avoid poor colour, blotches, other artifacts.
Flare reduces the acceptably linear portion of the characteristic curve to 11 stops with absolute best prime lenses. Adaptors, filters, any tiny amount of dust reduce it further.