Are you having problems with the lens when it's not shifted or tilted?
The problem could also be that the DF just can't focus indicate accurately with a 5.6 lens of that focal length.
I found that the focus indicator was far from accurate with the Hasselblad 110mm f2.
Could be a similar problem while at the opposite end of aperture size.
I also had problems using the focus verify with my 5.6 Fuji lenses on an adapter I made for the DF.
The 3.2 lenses did better.
(I modified the adapter to fit the Nikon D800. Live view focusing with them is a real treat).
However I think that the 120 TS is going to be limited on the DF body simply due to the low magnification of the viewfinder
and lack of waist level finder. Relying on the focus confirmation even if they fix it will be limiting as you need verify focus
in areas beyond the center due to the shifting focusing plane. Realtime live view would help, but the slow live view is
IMO too slow to mess around with complicated tilt shift.
If you do end up returning the lens you could always get a Fuji gx680 as a tilt shift side kick for your Phase One system.
The 680 has fully independent tilt shift both vertically and horizontally on all lenses from 50mm to 500mm.
The lenses go for about $200 to $400 used. The 125mm is available in 5.6 as well as 3.2.
Best of all you would also be able to use the loup viewfinder for super accurate focus all around the frame because it is mobile.
The loup can be moved up down, left and right to explore the whole frame.
You would need a kapture group to phase one adapter and keep in mind that the 680 is big!
Here is an example of critical focusing with the Fuji gx680 Phase One P25+ and the 180mm 3.2 wide open
Focus hit rate on the shoot was almost 100%. Keep in mind it was posed.