Good levelling makes it a little easier when you get onto the computer IMHO
I have been using, from the bottom up, a Manfrotto Junior 410 geared head, with a Manfrotto 300N Rotar, Gitzo (Arca Swiss clamp) to attach my Classic Ultimate RRS Pano head kit (anno 2003 i think).
Now I have just replaced the Manfrotto 410 with the Arca-Swiss Cube, hoping to get a little more compact and more precise setup with less slag, to avoid viabrations - will get back to you with how that will fare when I go out next month.
I also have a Acra Swiss B1 with the RRS PCL-1 on, but I find it too difficult to get precise leveling using a ball head over the geared head when making pano's - and yes they are ususally HDR and sometimes adding focus stacking but its becoming a nightmare when making really large pano's and having both HDR and Focus Stacking...
All the best with your setup, when you think about it, its pretty simple to see that having the rotation and levelling as close to the top of your equipment is the most desirable way to go
Henrik