Just wanted to post the final verdict for this issue. It turns out there is some very slight raised stippling on the paper. The inconsistent surface was not allowing the ink to spray properly onto the canvas and leaving numerous white specs/spots. After some comparison tests came out fine on another brand of paper, I happen to run my hand over the canvas prints where the issue had occurred. There was a slight, but noticeable difference in the texture of the paper there vs. the rest of the print where the ink printed without issue.
I sent some photos to Breathing Color and they called me back to tell me they are looking into the issue. They said this would be very rare, but possibly there is some contamination with the lot. The issue was made more elusive by the fact that it did not appear till about halfway through the roll, but this is definitely the source.
I started using Breathing Color products about six months ago and I've been very pleased with the results of their products. This is the second time BC has stepped up to help me solve an obscure issue with their products. Its good to know there our still companies out there willing stand behind their products. Wish I could say the same for GE and our dishwasher that is only 3 months old.