Your 3DX seems to have better IQ than my Alpha 900, although much of the sensor technology is shared, AFAIK.
Best regards
Erik
The D3x's 14bits and CFA create much of the difference between the two cameras. The D3x can certainly coax more shadow detail when boosting shadows, due to it's 14 bits (however the 14 bits are achieved,) and so it has a DR advantage over the A900. The A900 has better color separation/hue resolution in the greens than any current Nikon camera, because of the CFA choice. The cost of the better color separation of the Sony's CFA is that it blocks more light to the sensor than the Nikon's CFA, so more amplification is required at a given exposure. That is why the D3x has a bit better noise performance in low light.
It's really not a matter of better than. For landscape shooting, it's a matter of better shadow detail vs. better detail in things like foliage. The ideal landscape 35mm combination would probably be the 14bit D3x sensor with the A900's color filter.
p.s. from what I understand, the Sony CFA also makes the camera less friendly with some converters due to how the converters implement WB, causing blotchiness and poor detail. RPP has been a revelation in detail for my A900 files.