d300
1. You can save the head-ache re ISO 50, as that is not available.
2. As far as I see it, ISO 160 is the "native". However, as Emil pointed it out, there is no noise/DR related disadvantage with using lower ISO,
except for the metering: ISO 100 should be used with -2/3 EV bias (if, for some reasons you don't want to use the 1/3 stop ISO steps).
If you upload a set of raw files, ISO 100, 125, 160 and 200, whatever but shot immediately after each other, 14bit, losslessly compressed, then I can measure if 125 or 160 is the "native".
3. Increasing the ISO does not increase the noise; just the opposite, it decreases it, up to some limit, with the D300 up to 800 or 1600. See
Source of noise.