I'd imagine the slower shooting speeds on high ISO:s, especially when shooting with high-quality JPEG:s, is that the processor takes a longer time trying its best analysing the noisy image, trying to save each detail as well as possible. Nevertheless, this seems like yet another compromise/bad choice on Canon's part. It would be interesting to know whether this is a global issue.
Try lowering the JPEG quality and see if it has an effect on performance.
On the contrary to what Ray here claims, noise levels on raw (wonder who invented the capitalization of the word) images don't automatically affect the file size nor the processing time (since the image size is constant, noise or not). This becomes an issue only when the image is further compressed (which, in theory, could result in a lowered performance). Compression of raw-images hasn't been around for very long execpt for the high-end DSLR:s.