You really can't rely on diagnostic testing until the printer has initialized after repairs. That error message could be the result of a low ink cartridge. You'd have to check that the cartridge is at least 40% full and that the printheads associated with it are in order.
If you fix the cover limit switch and it runs with the cover closed, then you can start on your diagnostic testing.
The error codes can be incorrect for various reasons. Usually after repairs there are error code issues anyway. If you read the manual you'll see that it is advised to run the diagnostic codes before taking the printer apart.
In order to test if the ink supply is failing, you'd have to do a bongo test, which is extremely involved, which means unseating each cartridge, running the test per ink line, then replacing each cart doing the bongo test per cart. It requires a new set of carts or a set of starter carts (1/2 size).
The bongo test assures there are no leaks in the lines and the control points. Just one bad cartridge can cause the printer to fail to initialize. So best thing to do is to take things a step at a time, make sure you can close the cover and get the printer to initialize.
If you go looking for trouble with error codes, you'll easily find it at this stage. Just about everything is out of calibration since having been taken apart.
Hopefully, once you get the cover closed and working, everything will fall into place. If you find things wrong with the printer that weren't wrong before you took it apart, you can safely deduce that it has been incorrectly reassembled.
BTW - I contacted OLDVA on eBay and asked about his rear carriage bushings and he said he had made so many of them that his moulds wore out. He said he's going to make new moulds and begin a new manufacturing cycle. Since you already have 2 new ones it's a mute point, but I said I would contact him, and that was his answer.
Mark