Warranty, condition, support all matter a great deal.
Shutter count does not
directly mean anything at all.
Shutter count can serve as an imperfect proxy for age and amount of use. For instance a back with 100 shots is
less likely to have a firewire port that is worn out from being plugged in and out than a back with 700,000 shots. But even that is not for certain; if an overzealous assistant plugged in the firewire backwards on the back with a 100 shots and maybe the back with 700,000 was being used in an industrial application where the firewire port was never touched.
Buying a
refurbished digital back with an official factory warranty from a dealer is a good compromise between the price of a new kit and the risk of buying used from a private seller. It also ensures new accessories like batteries, charger, and cables where a used sale generally means used/worn accessories.