Coatings throwing off focusing accuracy should only be an issue—if there's an issue—with AF, no? As the Loxia is a manual focus lens, don't you just magnify with the EVF and focus visually using the IR light detected by the sensor? I've never used Sonys for IR pic taking, but this method works great with various m43 cameras (using 720nm IR filters) and MF lenses.
(Attached IR selfie via Oly E-M1 & 12mm lens.)
-Dave-