I use the 5D and 1Ds MkII, and I agree that the 5D delivers a smoother result. However, there's no such thing as a free lunch and sometimes the 5D also gives a more "digital", slightly "over processed" appearance. Here's an example taken with the 5D and the 24-105 4.0L IS at ISO 200. First the full shot,
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No problems up to about A4 or even slightly larger. But when you get to A3 and above there's a very distinct digital look. Take a look at the grass at 100%, looks more like astro turf to my eye!
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Or take a look at the bascule of the bridge. Again, a distinct "digital" appearance.
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This shot was RAW developed in Phase One, it's had no additional noise reduction and only mild sharpening. I've found with the 5D that if there's areas of smooth tones, especially if they feature greens or browns or greys, then any excessive sharpening in conjunction with noise reduction is punished in the final print with extreme versions of this type of artificial look.
The 1Ds MkII is better at handling this kind of natural detail and tonal transitions, but it's not completely immune from it. I wonder if Canon have somehow elected to give noise reduction a high priority with their cameras, and consequently have chosen to sacrifice other components of the final look of the image? Certainly I never see these effects with shots taken with a Phase One P25, but then again with the P25 noise becomes visible at ISO 200 and, IMO at least, objectionable by ISO 400.