Thanks Chris,
Having spent a bit more time with Phocus now I can see that it does a better job with the RAW files. I am coming up with a workflow that works for me and learning all the Phocus hotkeys etc! Thanks for pushing me in this direction.
I am working on the sync issues with the GX680 and have the back working properly with my 4x5 camera. I have also been able to borrow a Mamiya AFDII to test it on and it exposes and syncs perfectly with that, as the i-adapter I am using is for Mamiya 645. However, I am having issues with focusing. I can't see any shims installed anywhere, but I can't get infinity focus on the AFDII and this is with MF lenses at their hard infinity stop. They still front focus and I only get something like infinity focus arriving at F16 through depth of field. This is on all the lenses I could test, which are 24mm, 50mm shift, 80mm, 120mm and 200mm. I find it really hard to believe that the i-adapter doesn't allow infinity ficus, but I can't see anything in the system which is causing this except for the sensor simply being too far back. I also have trouble with getting focus right with my 4x5 adapter and although the focus screen is very bad on that adapter (the sliding style) that could be caused by the i-adapter also. I adjusted focus on the GX680 focus adjustment screws for its focus screen, so less problem there, but again I had to do a lot of adjustment, so again it could be the i-adapter.
I was prepared to accept focusing issues and bad tolerances when using adapters on the 4x5 and GX680, but when using just the expensive and proprietary i-adapter onto a Mamiya AFDII I am really surprised to have problems. Am I being dumb? Very frustrating to have a cross-platform back and three systems to use it on and still unable to get it working satisfactorily on any system! Help!