I've not experienced that, Jeff, either in my 3880 running Cone's K7 or in my P800 running OEM inks. I do switch between matte and photo inks fairly often, rarely going more than a couple weeks. So perhaps that makes a difference?
Presumably your linearity improves after making a (throwaway) print or doing a power-clean? You shouldn't have to do either, of course - you would expect Epson would have dialed in how much ink must be flushed on each changeover, but who knows.