No that I've turned off the awful colour proofing in Aperture, at least I'm not seeing the real nasties on screen any more. However, I don't think that Aperture's de-bayering or de-mosaicing is very good. This is the algorithm that turns a colour filter array image into RGB. I'm working on code for GPU based real time de-bayering of high-definition video images, and I'm getting quite attuned to what is good and not so good, and Aperture is on the very basic side, no doubt to get the speed out of the de-bayering process. AFAIK, Apple are not using the GPU for de-bayering though, only the image processing.
The test print I did from Aperture looked fine also, but as I get practically a 1:1 pixel for pixel print from my 20D images, it's going to be really hard to spot bayer pattern nasties. However, if I was to do a big crop or print on a larger printer, they'd start to be visible. I certainly see them at 1:1 magnification on the computer.
Graeme